{"id":77,"date":"2024-03-24T22:05:37","date_gmt":"2024-03-24T22:05:37","guid":{"rendered":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/?page_id=77"},"modified":"2024-03-24T22:05:37","modified_gmt":"2024-03-24T22:05:37","slug":"t-m-muralis-research-collaborators","status":"publish","type":"page","link":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/t-m-muralis-research-collaborators\/","title":{"rendered":"T. M. MURALI’S RESEARCH COLLABORATORS"},"content":{"rendered":"\n

Our research relies on strong collaborations with life scientists, mathematicians, biophysicists, and computer scientists.\u00a0I co-direct the\u00a0ICTAS Center for Systems Biology of Engineered Tissues<\/a>. I am the associate director of the\u00a0Computational Tissue Engineering<\/a>\u00a0interdisciplinary graduate education program. I am also a member of\u00a0MENGO<\/a>, a Microbial ENergy processes Gene Ontology project.<\/p>\n\n\n\n

Active Collaborators<\/strong><\/td><\/td><\/td><\/tr>
Richard Helm<\/a>
Department of Biochemistry, Virginia Tech
Signaling pathways in bioengineered tissues
Shiv D. Kale<\/a>
Biocomplexity Institute, Virginia Tech
PathLinker<\/a>, GraphSpace<\/a>
John Kececiouglu<\/a>
Department of Computer Science, University of Arizona
Signaling hypergraphs
Simon Kasif<\/a>
Department of Biomedical Engineering, Boston University
Gene function prediction (GAIN<\/a>, Art<\/a>, TE and Systems Biology<\/a>)
Kurt Luther<\/a>
Department of Computer Science, Virginia Tech
Crowdsourcing of network layouts, GraphSpace<\/a>
Jean Peccoud<\/a>
Dept. of Chemical and Biological Engineering, Colorado State University
Combining top-down and bottom-up models in systems biology (Model validation<\/a>, GraphSpace<\/a>)
Padma Rajagopalan<\/a>
Department of Chemical Engineering, Virginia Tech
Systems biology of engineered 3-D cellular architectures (CS vs HM<\/a>, CBPLNs<\/a>, TE and Systems Biology<\/a>, 3-cell liver mimics<\/a>)
John Tyson<\/a>
Department of Biological Sciences, Virginia Tech
Combining top-down and bottom-up models in systems biology (LINKER<\/a>, START to FINISH<\/a>, Model validation<\/a>, GraphSpace<\/a>)<\/td>		<\/td><\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n
Other Collaborators<\/strong><\/td><\/td><\/td><\/tr>
Hans Bohnert<\/a>
Department of Plant Biology, UIUC
Plant stress response (CO2<\/a>)
Ruth Grene<\/a>
Department of Plant Pathology, Virginia Tech
Plant stress response (XcisClique<\/a>,\u00a0CO2<\/a>)
Lenwood Heath<\/a>
Department of Computer Science, Virginia Tech
Plant stress response (XcisClique<\/a>,\u00a0CO2<\/a>)
Michael G. Katze<\/a>
Department of Microbiology, University of Washington
HIV dependency factors<\/a>
Alexey Onufriev<\/a>
Department of Computer Science, Virginia Tech
Ligand diffusion pathways in proteins (myoglobin<\/a>)
Naren Ramakrishnan<\/a>
Department of Computer Science, Virginia Tech
Compositional data mining (CDM<\/a>),\u00a0Pursuit of truthiness<\/a>
Bruno Sobral<\/a>
Virginia Bioinformatics Institute, Virginia Tech
Host-pathogen protein interaction networks (prediction<\/a>,\u00a0landscape<\/a>,\u00a0PIG<\/a>,\u00a0bacterial-human<\/a>,\u00a0human-HIV<\/a>)
Brett Tyler<\/a>
Virginia Bioinformatics Institute, Virginia Tech
Gene function prediction (HDFs<\/a>), pathway analysis (perturbation<\/a>)<\/td>		<\/td><\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

Our research relies on strong collaborations with life scientists, mathematicians, biophysicists, and computer scientists.\u00a0I co-direct the\u00a0ICTAS Center for Systems Biology of Engineered Tissues. I am the associate director of the\u00a0Computational Tissue Engineering\u00a0interdisciplinary graduate education program. I am also a member of\u00a0MENGO, a Microbial ENergy processes Gene Ontology project. Active Collaborators Richard HelmDepartment of Biochemistry, Virginia […]<\/p>\n","protected":false},"author":447,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-77","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/pages\/77","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/users\/447"}],"replies":[{"embeddable":true,"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/comments?post=77"}],"version-history":[{"count":3,"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/pages\/77\/revisions"}],"predecessor-version":[{"id":80,"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/pages\/77\/revisions\/80"}],"wp:attachment":[{"href":"https:\/\/wordpress.cs.vt.edu\/tmmurali\/wp-json\/wp\/v2\/media?parent=77"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}